Basic Information
Locus ID:
gene.Cymno10g00390
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 275101 | 281817 | + | gene.Cymno10g00390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 87,138.27 Da | 46.75 | 72.59 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 515 | 800 | 1.61053E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 551 | 0.052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 557 | 593 | 7.8E-6 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 7.4E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 769 | 800 | 0.053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 682 | 717 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 600 | 637 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 513 | 800 | 1.12E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 645 | 800 | 8.8E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 490 | 644 | 5.8E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 762 | 800 | 0.017 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0093 | IPR006594 |
| SMART | SM00320 | WD40_4 | 512 | 551 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 640 | 676 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 720 | 759 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 679 | 717 | 2.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 593 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 637 | 3.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 560 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 768 | 800 | 12.314676 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 686 | 726 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 561 | 593 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 561 | 593 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.056808 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 768 | 800 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 604 | 646 | 10.241105 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 352 | - | - |
| Coils | Coil | Coil | 81 | 101 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_042517296.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Macadamia integrifolia] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PKA5 | Putative WD-repeat protein OS=Zostera marina OX=29655 GN=ZOSMA_215G00410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology