HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene.Cymno09g09580
Species & Taxonomic ID: Cymodocea nodosa & 55448
Genome Assembly: GCA_036874045.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
Chr09 21451536 21453182 - gene.Cymno09g09580
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.41 62,110.18 Da 42.59 85.55 -0.23
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 219 266 5.2E-9 IPR002885
Pfam PF13041 PPR repeat family 466 510 4.1E-11 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 382 439 6.5E-13 IPR002885
Pfam PF01535 PPR repeat 153 181 0.0012 IPR002885
Pfam PF13041 PPR repeat family 288 336 1.0E-14 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 405 543 1.7E-23 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 245 317 1.3E-16 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 93 243 2.5E-21 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 318 388 3.1E-18 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 467 498 6.5E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 397 429 9.4E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 257 288 3.5E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 153 181 2.0E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 326 360 6.8E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 291 325 2.2E-10 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 363 395 1.7E-6 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 359 393 11.39981 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 150 184 9.163705 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 394 428 11.049048 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 324 358 11.202506 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 254 288 11.279235 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 464 498 12.780933 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 289 323 11.838262 IPR002885
Coils Coil Coil 508 528 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G22670.1 Pentatricopeptide repeat (PPR) superfamily protein. 0
RefSeq XP_008804966.1 pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Phoenix dactylifera] 0
Swiss-Prot Q9LUJ4 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1 0
TrEMBL A0A0K9NVJ3 Putative Pentatricopeptide repeat-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_56G00120 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.