Basic Information
Locus ID:
gene.Cymno09g09200
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 21205271 | 21215445 | + | gene.Cymno09g09200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 139,931.06 Da | 51.80 | 75.26 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 42 | 169 | 1.26946E-31 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1120 | 1163 | 1.21453E-17 | - |
| CDD | cd12108 | Hr-like | 304 | 430 | 1.98261E-18 | - |
| CDD | cd12108 | Hr-like | 654 | 812 | 4.48189E-29 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 300 | 430 | 6.0E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1168 | 1225 | 5.4E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 653 | 782 | 7.6E-7 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 992 | 1067 | 5.3E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 48 | 171 | 4.6E-11 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1120 | 1162 | 7.2E-7 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 987 | 1048 | 3.01E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1058 | 1113 | 5.1E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1120 | 1166 | 3.93E-8 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 302 | 447 | 7.0E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 648 | 878 | 2.0E-22 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 38 | 189 | 2.9E-31 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1191 | 1232 | 7.2E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1116 | 1165 | 2.2E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1121 | 1162 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 985 | 1054 | 25.045517 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1057 | 1120 | 29.598812 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1121 | 1163 | 11.397556 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010906999.1 | zinc finger protein BRUTUS isoform X2 [Elaeis guineensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PEN6 | Zinc finger protein BRUTUS OS=Zostera marina OX=29655 GN=ZOSMA_269G00170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology