Basic Information
Locus ID:
gene.Cymno09g07860
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 20311468 | 20311968 | + | gene.Cymno09g07860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 18,462.92 Da | 39.44 | 87.59 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 92 | 153 | 2.09987E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 153 | 2.2E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 16 | 77 | 4.4E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 12 | 153 | 1.37E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 157 | 1.8E-43 | - |
| SMART | SM00054 | efh_1 | 53 | 81 | 1.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 128 | 156 | 8.3E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 0.013 | IPR002048 |
| SMART | SM00054 | efh_1 | 92 | 120 | 2.7E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 124 | 159 | 13.732334 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 9.910664 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 123 | 14.5413 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 13.313904 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 101 | 113 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 137 | 149 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_052199629.1 | probable calcium-binding protein CML16 [Diospyros lotus] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843VAR7 | Calmodulin OS=Colocasia esculenta OX=4460 GN=Taro_023430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology