Basic Information
Locus ID:
gene.Cymno09g07710
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 20206791 | 20207975 | + | gene.Cymno09g07710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 42,919.42 Da | 65.33 | 83.35 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 63 | 2.7E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 153 | 198 | 2.2E-4 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 79 | 4.91E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 69 | 301 | 7.59E-20 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 64 | 2.1E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 66 | 340 | 3.1E-12 | IPR015915 |
| SMART | SM00256 | fbox_2 | 25 | 65 | 2.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 9.815402 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23390.1 | Kelch repeat-containing F-box family protein. | 0 |
| RefSeq | XP_015894711.2 | F-box/kelch-repeat protein At1g23390 [Ziziphus jujuba var. spinosa] | 0 |
| Q9LDE3 | F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana OX=3702 GN=At1g23390 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NJK6 | F-box domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_97G00290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5502, jg9481 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18319, gene_3625 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013595 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42895, Sbi_jg45509 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11356 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35315, Sgl40674 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000380, gene:ENSEOMG00000013799 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0005040, CQ.Regalona.r1.6BG0005240 |
| Apiaceae | Apium graveolens | 1 | Ag6G00316 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708205 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G10709, Ftri8G18066 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G23390.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007835m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g20830.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g038670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1383 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1469 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07710 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g03330, gene.Thate03g03340, gene.Thate03g03350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033001 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2895, BH02.2977, CH02.3552 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0030240, gene-QOZ80_1BG0080280 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0283480.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054800 |
| Poaceae | Oryza coarctata | 3 | Oco02G018590, Oco03G009810, Oco04G010130 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g50840.1, LOC_Os02g26670.1, LOC_Os09g12150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G248400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr03G014410 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G047200, Tel3E01G427100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG038040, gene_TRIDC3BG042790 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G253800.1.cds1, TraesCS3B02G285700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb155550_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12678, nbis-gene-1316, nbis-gene-51875 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.415, evm.TU.LG12.1289 |
| Posidoniaceae | Posidonia oceanica | 10 | gene.Posoc04g05230, gene.Posoc04g05240, gene.Posoc04g05260 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.763, evm.TU.Scaffold_17_RagTag.218 ... |
| Rhizophoraceae | Carallia pectinifolia | 7 | nbisL1-mrna-23112, nbisL1-mrna-23113, nbisL1-mrna-23114 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11697, nbisL1-mrna-11698 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14750, nbisL1-mrna-14751 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000013l.47, add.evm.TU.utg000013l.49 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006540, Maker00006544 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19553, nbisL1-mrna-19554 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15876, nbisL1-mrna-15877 |
| Salicaceae | Populus euphratica | 1 | populus_peu21812 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641090 |
| Solanaceae | Solanum chilense | 1 | SOLCI001454400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019086 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03480.v3.1 |