Basic Information
Locus ID:
gene.Cymno09g07370
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 19787314 | 19789647 | + | gene.Cymno09g07370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 87,184.83 Da | 36.41 | 64.92 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 456 | 483 | 0.01 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 652 | 766 | 3.3E-36 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 394 | 414 | 0.095 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 486 | 515 | 2.2E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 441 | 535 | 2.0E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 536 | 656 | 3.1E-8 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 455 | 483 | 4.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 486 | 518 | 2.3E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 483 | 517 | 10.709248 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 665 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_029123805.1 | pentatricopeptide repeat-containing protein At2g25580 isoform X2 [Elaeis guineensis] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PGB1 | Pentatricopeptide repeat protein OS=Zostera marina OX=29655 GN=ZOSMA_24G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology