Basic Information
Locus ID:
gene.Cymno09g07270
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 19708818 | 19709534 | - | gene.Cymno09g07270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 26,564.92 Da | 60.00 | 75.38 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 28 | 72 | 8.29838E-32 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 29 | 70 | 2.4E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 83 | 1.08E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 84 | 6.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 30 | 70 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 30 | 71 | 13.389211 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 45 | 54 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 6 | 20 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010246977.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185 isoform X1 [Nelumbo nucifera] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7Z1Q1 | RING-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104590139 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology