Basic Information
Locus ID:
gene.Cymno09g05470
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 18377861 | 18378664 | + | gene.Cymno09g05470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 30,038.82 Da | 50.72 | 107.64 | 0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 48 | 77 | 1.4E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 39 | 107 | 2.37E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 140 | 4.6E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 48 | 102 | 1.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 103 | 10.512376 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 67 | 76 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042487423.1 | uncharacterized protein LOC122067649 [Macadamia integrifolia] | 0 |
| TrEMBL | A0A059AQH8 | RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology