Basic Information
Locus ID:
gene.Cymno09g01830
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 2089855 | 2097851 | + | gene.Cymno09g01830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 77,735.47 Da | 40.56 | 87.63 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 140 | 199 | 3.5E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 407 | 678 | 7.7E-43 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 5.1E-7 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 236 | 4.56E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 383 | 678 | 8.34E-70 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 368 | 482 | 2.2E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 270 | 7.3E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 484 | 702 | 8.9E-53 | - |
| SMART | SM00369 | LRR_typ_2 | 90 | 116 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 161 | 9.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 208 | 110.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 188 | 210 | 7.419328 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 405 | 681 | 35.085548 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 712 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_010273793.1 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Nelumbo nucifera] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NNS9 | Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Zostera marina OX=29655 GN=ZOSMA_84G00480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology