Basic Information
Locus ID:
gene.Cymno09g01490
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 1324349 | 1340638 | + | gene.Cymno09g01490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 39,715.89 Da | 55.24 | 85.96 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 305 | 349 | 9.2278E-20 | - |
| Pfam | PF13639 | Ring finger domain | 305 | 347 | 7.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 299 | 351 | 6.56E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 354 | 5.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 306 | 346 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 306 | 347 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 164 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11680.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_043687494.1 | E3 ubiquitin-protein ligase At1g12760-like isoform X2 [Telopea speciosissima] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YWW6 | E3 ubiquitin-protein ligase At1g12760 OS=Anthurium amnicola OX=1678845 GN=At1g12760_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology