Basic Information
Locus ID:
gene.Cymno09g01390
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 1168382 | 1176230 | + | gene.Cymno09g01390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 83,588.55 Da | 52.62 | 82.79 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 27 | 228 | 2.70859E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 229 | 362 | 5.58295E-63 | - |
| Pfam | PF16124 | RecQ zinc-binding | 366 | 438 | 7.4E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 43 | 209 | 1.4E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 249 | 351 | 2.3E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 78 | 373 | 2.13E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 228 | 1.0E-85 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 229 | 454 | 8.9E-62 | IPR027417 |
| SMART | SM00487 | ultradead3 | 35 | 237 | 7.6E-33 | IPR014001 |
| SMART | SM00490 | helicmild6 | 272 | 353 | 5.5E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 29 | 441 | 6.3E-140 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 47 | 221 | 23.681187 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 241 | 393 | 18.81955 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 666 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_010917457.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Elaeis guineensis] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PZQ0 | ATP-dependent DNA helicase OS=Zostera marina OX=29655 GN=ZOSMA_144G00260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology