Basic Information
Locus ID:
gene.Cymno09g01350
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 1152832 | 1156451 | + | gene.Cymno09g01350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 13,488.51 Da | 52.84 | 83.70 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16485 | mRING-H2-C3H2C2D_RBX1 | 51 | 112 | 3.81907E-42 | - |
| Pfam | PF12678 | RING-H2 zinc finger domain | 51 | 109 | 2.6E-24 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 116 | 1.48E-37 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 119 | 2.1E-32 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 109 | 9.199359 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20570.1 | RING-box 1. Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein. | 0 |
| RefSeq | XP_018844896.1 | RING-box protein 1a-like [Juglans regia] | 0 |
| Q940X7 | RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J6USP7 | Ring-box protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_035121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31759, jg32867 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_5593, gene_6709 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015084, Ah028771 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g169890 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2032, Sbi_jg24671, Sbi_jg34473, Sbi_jg8531 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20063, Seu_jg2736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002832, GOSA_00022736 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42793, Sgl47546, Sgl73464, Sgl76984 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006147, gene:ENSEOMG00000008875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0016080, CQ.Regalona.r1.8BG0017210 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30119070, pistato.v30217960, pistato.v30260170 |
| Apiaceae | Apium graveolens | 1 | Ag5G00928 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010060, scaffold021465G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701991, gene-LOC103711519, gene-LOC120113304 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.624.V1.1, AsparagusV1_07.2901.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G18073, Ftri4G01090 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G42830.1, AT5G20570.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009688m.g.v1.0, Thhalv10015047m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g23910.v2.2, SpUn0007_0070.v2.2, SpUn0013_0100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042270.2N, BniB05g042950.2N, BniB08g010520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0777 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno03g10980, gene.Cymno09g01350, gene.Cymno11g09960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g25780, gene.Thate09g19560 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.154, evm.TU.LG07.1325 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001564, Pov_00001833, Pov_00001842, Pov_00004024 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17973 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1109, AH07.3164, BH02.998, BH07.2995, CH02.1104 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0006490, gene-QOZ80_1BG0055210 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0218390.1, HORVU.MOREX.r3.6HG0607930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018934, gene-QYE76_049722 |
| Poaceae | Oryza coarctata | 3 | Oco02G000360, Oco03G019460, Oco04G020240 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01700.1, LOC_Os02g47870.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G087500, gene-BS78_04G249100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205913, Pt_Chr0206472, Pt_Chr0206709 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G025370, Chr03G002750, Chr05G003110, Chr06G003980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G001800, Tel6E01G502100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG003210, gene_TRIDC3BG000130 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G001800.1, TraesCS3B02G000800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb126700_P001, Zm00001eb188540_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22089, nbis-gene-32343, nbis-gene-45820 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g16987, Zma_g7470, Zma_g9809 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2454, evm.TU.LG12.1596, evm.TU.LG19.67 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g27240, gene.Posoc08g03970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.577, evm.TU.Scaffold_4_RagTag.1010 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12936, nbisL1-mrna-6774 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12818, nbisL1-mrna-14674 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16966 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.656, evm.TU.utg000033l.405 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000502, Maker00015081 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8126 |
| Salicaceae | Populus euphratica | 2 | populus_peu02900, populus_peu33796 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132633526, gene-LOC132636921, gene-LOC132645335 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005489, gene-LOC107021447 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_530 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0471 |
| Zosteraceae | Zostera marina | 2 | Zosma05g13680.v3.1, Zosma05g13690.v3.1 |