Basic Information
Locus ID:
gene.Cymno09g00490
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ATP binding DNA binding helicase nucleic acid binding protein binding zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 340210 | 353729 | - | gene.Cymno09g00490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 132,318.52 Da | 48.52 | 81.91 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1040 | 1145 | 1.6866E-51 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 452 | 774 | 3.34378E-85 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 889 | 926 | 3.7E-9 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1038 | 1135 | 2.7E-13 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 472 | 851 | 1.7E-63 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 783 | 1192 | 1.23E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 435 | 774 | 1.49E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 884 | 939 | 3.14E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 875 | 940 | 2.7E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 668 | 775 | 1.0E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 429 | 520 | 8.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 950 | 1192 | 6.0E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 540 | 661 | 3.4E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 448 | 741 | 6.0E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1052 | 1135 | 2.6E-14 | IPR001650 |
| SMART | SM00184 | ring_2 | 889 | 927 | 3.1E-7 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 467 | 736 | 12.464464 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1009 | 1188 | 14.273355 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 889 | 926 | 10.999225 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 904 | 913 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 543 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_010908905.1 | helicase-like transcription factor CHR28 isoform X1 [Elaeis guineensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P1E4 | Putative DNA repair helicase rad5,16 OS=Zostera marina OX=29655 GN=ZOSMA_442G00010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology