Basic Information
Locus ID:
gene.Cymno08g08280
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 22115364 | 22115994 | - | gene.Cymno08g08280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 20,561.60 Da | 61.44 | 94.67 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 56 | 1.08022E-20 | - |
| Pfam | PF04564 | U-box domain | 6 | 80 | 9.9E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 84 | 2.36E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 3.0E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 78 | 3.4E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 85 | 33.279289 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_012077907.1 | E3 ubiquitin-protein ligase PUB24 [Jatropha curcas] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843WHQ2 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_043923 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology