Basic Information
Locus ID:
gene.Cymno08g06600
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
leucine-rich repeat receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 20881361 | 20884500 | - | gene.Cymno08g06600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 110,731.48 Da | 33.70 | 101.24 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 176 | 194 | 0.44 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 370 | 389 | 0.21 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 703 | 969 | 5.2E-42 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 41 | 78 | 8.0E-9 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 127 | 141 | 1.6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 298 | 319 | 1.6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 369 | 625 | 5.78E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 686 | 971 | 5.8E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 71 | 388 | 9.52E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 341 | 636 | 3.2E-84 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 90 | 340 | 5.6E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 89 | 1.3E-6 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 674 | 777 | 3.0E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 778 | 989 | 1.6E-57 | - |
| SMART | SM00369 | LRR_typ_2 | 562 | 586 | 99.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 514 | 538 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 295 | 318 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 343 | 367 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 247 | 271 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 222 | 290.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 701 | 948 | 1.9E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 466 | 490 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 368 | 390 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 174 | 390.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 701 | 975 | 36.216267 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 6.0 | - |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 822 | 834 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1000 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65700.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | 0 |
| RefSeq | XP_043722830.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Telopea speciosissima] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J6VZD4 | Receptor protein kinase clavata1 OS=Thalictrum thalictroides OX=46969 GN=FRX31_020165 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology