Basic Information
Locus ID:
gene.Cymno08g06060
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 20425872 | 20427670 | + | gene.Cymno08g06060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 48,657.95 Da | 46.48 | 75.61 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 347 | 386 | 5.5E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 149 | 266 | 6.67E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 76 | 134 | 5.89E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 341 | 390 | 8.2E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 328 | 390 | 1.8E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 139 | 301 | 1.2E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 344 | 386 | 10.997721 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_042981647.1 | F-box protein At1g67340-like [Carya illinoinensis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1QHH4 | MYND-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_05G109800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology