Basic Information
Locus ID:
gene.Cymno08g04350
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Diphthamide synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18950606 | 18970040 | - | gene.Cymno08g04350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 81,401.00 Da | 43.66 | 104.50 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06156 | eu_AANH_C_2 | 429 | 554 | 2.55139E-25 | - |
| CDD | cd01994 | Alpha_ANH_like_IV | 2 | 214 | 6.85168E-95 | IPR002761 |
| Pfam | PF01902 | Diphthamide synthase | 1 | 223 | 4.6E-38 | IPR002761 |
| Pfam | PF01042 | Endoribonuclease L-PSP | 321 | 401 | 2.6E-6 | IPR006175 |
| Pfam | PF01042 | Endoribonuclease L-PSP | 422 | 553 | 6.6E-8 | IPR006175 |
| SUPERFAMILY | SSF55298 | YjgF-like | 411 | 557 | 3.53E-16 | IPR035959 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 1 | 239 | 1.34E-64 | - |
| SUPERFAMILY | SSF55298 | YjgF-like | 319 | 402 | 5.5E-9 | IPR035959 |
| Gene3D | G3DSA:3.30.1330.40 | - | 406 | 555 | 8.0E-20 | IPR035959 |
| Gene3D | G3DSA:3.30.1330.40 | - | 299 | 405 | 2.0E-8 | IPR035959 |
| Gene3D | G3DSA:3.90.1490.10 | - | 159 | 253 | 3.7E-25 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 157 | 4.0E-56 | IPR014729 |
| TIGRFAM | TIGR00290 | MJ0570_dom: MJ0570-related uncharacterized domain | 1 | 229 | 1.9E-60 | IPR002761 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04480.1 | endoribonucleases. | 0 |
| RefSeq | XP_034707280.1 | diphthine--ammonia ligase [Vitis riparia] | 0 |
| A2RV01 | Diphthine--ammonia ligase OS=Danio rerio OX=7955 GN=dph6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NH31 | Diphthine--ammonia ligase OS=Zostera marina OX=29655 GN=ZOSMA_9G01630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2647 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9932 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009750 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214790 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12124, Sbi_jg47061, Sbi_jg47063, Sbi_jg47064 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21343, Seu_jg21346 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020362 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl56126, Sgl61534, Sgl61557, Sgl83267 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013776, gene:ENSEOMG00000039777 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003600, CQ.Regalona.r1.9AG0020970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30090960 |
| Apiaceae | Apium graveolens | 1 | Ag7G02041 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G009870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721763 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.930.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G22525 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020155m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g059070.2N, BniB01g059080.2N, BniB07g033700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1652 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1711 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0199s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08710 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2190 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019032 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07031 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3898, BH07.3698, CH07.3767 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149860, gene-QOZ80_2BG0204330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026720 |
| Poaceae | Oryza coarctata | 1 | Oco03G024860 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56565.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G314100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604148, Pt_Chr0604207 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G017110, Chr0G008850, Chr13G001200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G683300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG056270, gene_TRIDC6BG065750 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G378100.1, TraesCS6B02G415800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb258450_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39847 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17384 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.444, evm.TU.LG22.1458 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g09600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1897 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3299 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2704 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13818 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.155 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005823 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12883 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16295 |
| Salicaceae | Populus euphratica | 4 | populus_peu15983, populus_peu15984, populus_peu15985 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614059 |
| Solanaceae | Solanum chilense | 1 | SOLCI006204800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018291 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6021 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3354 |
| Zosteraceae | Zostera marina | 3 | Zosma03g32730.v3.1, Zosma03g32790.v3.1, Zosma03g32800.v3.1 |