Basic Information
Locus ID:
gene.Cymno08g04180
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18765876 | 18774320 | - | gene.Cymno08g04180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.38 | 167,911.41 Da | 43.36 | 88.89 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 616 | 651 | 3.34876E-19 | - |
| CDD | cd03788 | GT20_TPS | 711 | 1201 | 0.0 | IPR001830 |
| Pfam | PF00628 | PHD-finger | 617 | 654 | 1.1E-7 | IPR019787 |
| Pfam | PF02358 | Trehalose-phosphatase | 1251 | 1391 | 7.1E-43 | IPR003337 |
| Pfam | PF00982 | Glycosyltransferase family 20 | 711 | 1201 | 3.3E-183 | IPR001830 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 711 | 1204 | 6.73E-152 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 1248 | 1390 | 1.0E-25 | IPR036412 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 605 | 648 | 1.46E-10 | IPR011011 |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 698 | 972 | 2.0E-90 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 973 | 1186 | 9.0E-75 | - |
| Gene3D | G3DSA:3.30.70.1020 | - | 1330 | 1386 | 3.1E-16 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 1250 | 1329 | 3.1E-16 | IPR023214 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 602 | 659 | 4.9E-13 | IPR013083 |
| TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 1250 | 1404 | 1.7E-12 | IPR006379 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68020.2 | UDP-Glycosyltransferase / trehalose-phosphatase family protein. Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme. | 0 |
| RefSeq | XP_010271238.1 | PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6-like [Nelumbo nucifera] | 0 |
| Q94AH8 | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana OX=3702 GN=TPS6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A843XRM2 | Glyco_transf_20 domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_055531 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology