Basic Information
Locus ID:
gene.Cymno08g04020
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Farnesoic acid 0-methyl transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18652895 | 18661662 | + | gene.Cymno08g04020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 108,296.00 Da | 45.24 | 81.87 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 483 | 550 | 2.5103E-16 | - |
| Pfam | PF12248 | Farnesoic acid 0-methyl transferase | 188 | 288 | 1.0E-21 | IPR022041 |
| Pfam | PF00754 | F5/8 type C domain | 812 | 923 | 3.6E-8 | IPR000421 |
| Pfam | PF00651 | BTB/POZ domain | 476 | 587 | 3.9E-18 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 339 | 432 | 3.2E-13 | IPR000210 |
| Pfam | PF07707 | BTB And C-terminal Kelch | 598 | 670 | 2.1E-7 | IPR011705 |
| SUPERFAMILY | SSF54695 | POZ domain | 339 | 431 | 4.71E-13 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 471 | 586 | 1.49E-19 | IPR011333 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 786 | 941 | 2.93E-10 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 795 | 941 | 6.6E-6 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 337 | 454 | 8.1E-17 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 621 | 740 | 1.4E-14 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 462 | 620 | 1.2E-26 | IPR011333 |
| SMART | SM00875 | BACK_2 | 595 | 718 | 1.2E-11 | IPR011705 |
| SMART | SM00225 | BTB_4 | 484 | 588 | 1.9E-11 | IPR000210 |
| SMART | SM00225 | BTB_4 | 346 | 436 | 2.4E-12 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 484 | 553 | 16.197052 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 346 | 406 | 11.564283 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30600.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_010266159.1 | PREDICTED: BTB/POZ domain-containing protein At2g30600 [Nelumbo nucifera] | 0 |
| Q8LEV3 | BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana OX=3702 GN=At2g30600/At2g30610 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8Q6E3 | BTB/POZ domain-containing protein At2g30600 OS=Nelumbo nucifera OX=4432 GN=LOC104603746 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6055 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8649 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035916 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39869, Sbi_jg55201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14460 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014225 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12345, Sgl17629 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020317, gene:ENSEOMG00000034283 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022970, CQ.Regalona.r1.1BG0001290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048400 |
| Apiaceae | Apium graveolens | 1 | Ag3G02602 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701097 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1057.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03754 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30600.5 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016264m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g013530.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0843 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0853s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.86 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037415 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21253 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.14, BH06.5, CH06.5 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0457480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0318660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016901 |
| Poaceae | Oryza coarctata | 2 | Oco10G007270, Oco24G004280 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g27880.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G000200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301595, Pt_Chr0306587 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G024690, Chr0G024700, Chr0G024710, Chr14G000310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G773500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG067750, gene_TRIDC3BG076700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G480600.1, TraesCS3B02G525700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb379580_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53467 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28945 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.513, evm.TU.LG03.514, evm.TU.LG12.1208 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1352 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9144 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16827 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15299 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.471 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003252 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9565 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18728 |
| Salicaceae | Populus euphratica | 2 | populus_peu15473, populus_peu33116 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628201 |
| Solanaceae | Solanum chilense | 1 | SOLCI004761300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017880 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1881 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2447 |