Basic Information
Locus ID:
gene.Cymno08g03930
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18546527 | 18557105 | - | gene.Cymno08g03930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 135,972.52 Da | 50.11 | 79.78 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 657 | 789 | 4.44655E-72 | - |
| CDD | cd17920 | DEXHc_RecQ | 454 | 656 | 4.78494E-100 | - |
| Pfam | PF00570 | HRDC domain | 1031 | 1098 | 2.8E-12 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 673 | 779 | 1.3E-16 | IPR001650 |
| Pfam | PF09382 | RQC domain | 879 | 992 | 1.6E-20 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 468 | 635 | 1.4E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 791 | 871 | 9.0E-15 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 312 | 798 | 5.79E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 655 | 919 | 7.98E-56 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1024 | 1102 | 1.37E-13 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 430 | 656 | 6.9E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 875 | 996 | 3.0E-18 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1022 | 1112 | 9.5E-21 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 657 | 874 | 4.6E-65 | IPR027417 |
| SMART | SM00341 | hrdc7 | 1026 | 1108 | 3.4E-6 | IPR002121 |
| SMART | SM00490 | helicmild6 | 699 | 780 | 6.7E-25 | IPR001650 |
| SMART | SM00487 | ultradead3 | 462 | 665 | 6.0E-30 | IPR014001 |
| SMART | SM00956 | RQC_2 | 881 | 992 | 4.2E-21 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 458 | 932 | 3.6E-164 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 474 | 649 | 22.203648 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1026 | 1108 | 17.873938 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 689 | 731 | 9.419681 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 671 | 834 | 19.651108 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 998 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1129 | - | - |
| Coils | Coil | Coil | 333 | 356 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_038989126.1 | ATP-dependent DNA helicase Q-like 4A [Phoenix dactylifera] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AQS0 | DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC103701408 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology