Basic Information
Locus ID:
gene.Cymno08g03710
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18310955 | 18324653 | + | gene.Cymno08g03710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 66,527.93 Da | 46.43 | 77.37 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 403 | 611 | 6.87E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 326 | 593 | 9.8E-13 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 238 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009414589.1 | PREDICTED: uncharacterized protein LOC103995666 [Musa acuminata subsp. malaccensis] | 0 |
| TrEMBL | A0A4S8K861 | WD_REPEATS_REGION domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb08t32420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23067 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30037860 |
| Apiaceae | Apium graveolens | 1 | Ag4G02444 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710097 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.388.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G08174 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1975 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2121 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03710 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0048s00035.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g10220 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.207 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022992 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3994, BH02.4013, CH02.4042 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041100, gene-QOZ80_1BG0091140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299660.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G025840, Oco02G026770 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G348600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601301, Pt_Chr0601326 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G003720, Chr05G029540 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G599900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG054290, gene_TRIDC3BG060940 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G378600.1, TraesCS3B02G411200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb146700_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28631 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11621 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g16680 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9736 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2207 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18106 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.658 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003024 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-9630, nbisL1-mrna-9631 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18647 |
| Salicaceae | Populus euphratica | 1 | populus_peu32562 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627326 |
| Solanaceae | Solanum chilense | 1 | SOLCI000180400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018361 |
| Zosteraceae | Zostera marina | 1 | Zosma04g15940.v3.1 |