Basic Information
Locus ID:
gene.Cymno08g03690
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18299174 | 18300496 | - | gene.Cymno08g03690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 48,673.56 Da | 52.23 | 99.95 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 52 | 1.24073E-19 | - |
| Pfam | PF04564 | U-box domain | 7 | 79 | 8.9E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 394 | 3.57E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 83 | 6.56E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 4.5E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 91 | 414 | 7.2E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 5.0E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 37.560608 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010911942.1 | E3 ubiquitin-protein ligase PUB23 [Elaeis guineensis] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QPM4 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105037988 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology