Basic Information
Locus ID:
gene.Cymno08g03480
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
biotin synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18152357 | 18165816 | + | gene.Cymno08g03480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 41,452.10 Da | 34.84 | 81.97 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01335 | Radical_SAM | 97 | 297 | 2.22868E-10 | - |
| Pfam | PF04055 | Radical SAM superfamily | 97 | 255 | 2.6E-15 | IPR007197 |
| Pfam | PF06968 | Biotin and Thiamin Synthesis associated domain | 269 | 359 | 1.5E-18 | IPR010722 |
| SUPERFAMILY | SSF102114 | Radical SAM enzymes | 52 | 362 | 1.7E-86 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 51 | 363 | 3.5E-137 | IPR013785 |
| SMART | SM00876 | BATS_2 | 269 | 361 | 5.8E-41 | IPR010722 |
| SMART | SM00729 | MiaB | 90 | 298 | 8.9E-44 | IPR006638 |
| TIGRFAM | TIGR00433 | bioB: biotin synthase | 61 | 359 | 6.0E-115 | IPR002684 |
| PIRSF | PIRSF001619 | Biotin_synth | 35 | 368 | 2.0E-139 | IPR024177 |
| ProSiteProfiles | PS51918 | Radical SAM core domain profile. | 85 | 314 | 33.407631 | IPR007197 |
| Hamap | MF_01694 | Biotin synthase [bioB]. | 52 | 362 | 40.558243 | IPR002684 |
| SFLD | SFLDG01278 | biotin synthase like | 48 | 364 | 0.0 | - |
| SFLD | SFLDF00272 | biotin synthase | 48 | 364 | 0.0 | IPR024177 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43360.1 | Radical SAM superfamily protein. Catalyzes the conversion of dethiobiotin to biotin. | 0 |
| RefSeq | XP_052294757.1 | biotin synthase, mitochondrial isoform X1 [Citrus sinensis] | 0 |
| P54967 | Biotin synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BIO2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PDL1 | biotin synthase OS=Zostera marina OX=29655 GN=ZOSMA_27G01100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18934, jg5961 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2908 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019325 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g054800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15257, Sbi_jg56066 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26551 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006281 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01702, Sgl01703, Sgl06858 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009410, gene:ENSEOMG00000031343 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0000040, CQ.Regalona.r1.4BG0015520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30243650 |
| Apiaceae | Apium graveolens | 1 | Ag2G00476 |
| Arecaceae | Cocos nucifera | 1 | scaffold034468G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717547, gene-LOC108511610 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1343.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G19843 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G43360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001495m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g25460.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g002130.2N, BniB08g028310.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2085 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2284 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03480 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0329s00001.v1.0, Dusal.0329s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.138 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008369 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20461 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2240, BH08.2370, CH08.2546 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638210, gene-QOZ80_8BG0667710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686000.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030413 |
| Poaceae | Oryza coarctata | 2 | Oco15G013680, Oco16G012860 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403532 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G018390, Chr20G002400, Chr29G001080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG035000, gene_TRIDC7BG025990 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267300.1, TraesCS7B02G164700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb037230_P001, Zm00001eb198320_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17563, nbis-gene-42757 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23355, Zma_g24462 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG11.1283, evm.TU.LG11.1286 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15540 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.48677.4, evm.TU.Scaffold_3_RagTag.1465 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1780 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15532, nbisL1-mrna-2155 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-2693, nbisL1-mrna-2696, nbisL1-mrna-2720 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.358 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002258 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12302, nbisL1-mrna-15781, nbisL1-mrna-21674 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12832, nbisL1-mrna-12852 |
| Salicaceae | Populus euphratica | 3 | populus_peu22623, populus_peu22631, populus_peu24054 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603380 |
| Solanaceae | Solanum chilense | 1 | SOLCI004575100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023660 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_10556, gene_12979, gene_2073 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2304 |
| Zosteraceae | Zostera marina | 1 | Zosma02g07210.v3.1 |