Basic Information
Locus ID:
gene.Cymno08g02970
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 17692701 | 17718369 | - | gene.Cymno08g02970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 102,586.87 Da | 47.73 | 81.21 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 728 | 883 | 1.77875E-59 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 302 | 882 | 8.3E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 34 | 136 | 2.1E-22 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 300 | 884 | 2.16E-108 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 11 | 136 | 3.27E-26 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 289 | 527 | 8.2E-68 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 679 | 891 | 1.6E-57 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 150 | 232 | 4.8E-10 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 1 | 149 | 1.8E-36 | - |
| SMART | SM00695 | dusp | 30 | 139 | 3.3E-30 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 302 | 885 | 56.325592 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 11 | 136 | 18.679293 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 827 | 844 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 303 | 318 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_008794941.2 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Phoenix dactylifera] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9P215 | Ubiquitin carboxyl-terminal hydrolase OS=Zostera marina OX=29655 GN=ZOSMA_42G00600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology