Basic Information
Locus ID:
gene.Cymno08g02230
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 17085619 | 17098169 | - | gene.Cymno08g02230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 54,232.71 Da | 43.80 | 82.33 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 219 | 463 | 1.44593E-81 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 90 | 176 | 1.6E-12 | IPR020683 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 214 | 462 | 2.0E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 214 | 463 | 5.74E-63 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 88 | 176 | 2.49E-24 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 282 | 482 | 3.2E-47 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 80 | 192 | 1.2E-25 | IPR036770 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 201 | 280 | 9.5E-19 | - |
| SMART | SM00248 | ANK_2a | 85 | 113 | 110.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 150 | 180 | 2500.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 146 | 2.0E-8 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 7 | 484 | 1.7E-196 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 149 | 15.41384 | IPR002110 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 201 | 467 | 36.046661 | IPR000719 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 149 | 14.026375 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43850.3 | - | 0 |
| RefSeq | XP_029118173.1 | LOW QUALITY PROTEIN: integrin-linked protein kinase 1-like [Elaeis guineensis] | 0 |
| F4IS56 | Integrin-linked protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=ILK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8N4EZ85 | LOW QUALITY PROTEIN: integrin-linked protein kinase 1-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15759 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019668 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38465, Sbi_jg6572 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15353 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006450, GOSA_00006451 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01883, Sgl07061 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015218, gene:ENSEOMG00000031382 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0011350, CQ.Regalona.r1.3BG0011480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30247890 |
| Apiaceae | Apium graveolens | 2 | Ag5G02742, Ag8G01287 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G021880, scaffold002973G000160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706059, gene-LOC103715196 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.516.V1.1, AsparagusV1_10.1446.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01195, Ftri12G21829 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G31800.1, AT2G43850.1, AT3G59830.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001418m.g.v1.0, Thhalv10005933m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g14140.v2.2, Sp4g25920.v2.2, Sp5g03310.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g002380.2N, BniB01g012350.2N, BniB06g053860.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0273 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g11430, gene.Cymno08g02230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g07140, gene.Thate04g07150 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4890 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.496 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04256 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4151, AH07.2543, BH02.4166, BH07.2354, CH02.4201 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0042750, gene-QOZ80_1BG0092680 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0306300.2, HORVU.MOREX.r3.6HG0593300.1 |
| Poaceae | Oryza coarctata | 4 | Oco01G027060, Oco02G028140, Oco03G014930, Oco04G015420 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66860.2, LOC_Os02g39560.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G365000, gene-BS78_04G191200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204546, Pt_Chr0600183 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G021750, Chr05G030660, Chr09G012030, Chr0G023890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G636100, Tel6E01G423500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG057110, gene_TRIDC3BG064000 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G400600.1, TraesCS3B02G433600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb145050_P003, Zm00001eb246710_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18580, nbis-gene-28506 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11702, Zma_g16640 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1525, evm.TU.LG11.886 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g05760 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1556, evm.TU.Scaffold_6_RagTag.1167 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15490, nbisL1-mrna-1868 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13242, nbisL1-mrna-18248 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1005, nbisL1-mrna-2772 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.747, evm.TU.utg000019l.294 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001874, Maker00007966 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13555, nbisL1-mrna-5397 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12927, nbisL1-mrna-4086 |
| Salicaceae | Populus euphratica | 2 | populus_peu22477, populus_peu23872 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609294, gene-LOC132636045 |
| Solanaceae | Solanum chilense | 2 | SOLCI004391800, SOLCI005126000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005229, gene-LOC107026615 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12469, gene_6446 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1843 |
| Zosteraceae | Zostera marina | 2 | Zosma02g14270.v3.1, Zosma05g00830.v3.1 |