Basic Information
Locus ID:
gene.Cymno08g00880
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ig-like domain from next to BRCA1 gene
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 929471 | 934544 | + | gene.Cymno08g00880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 102,551.01 Da | 37.10 | 82.58 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14947 | NBR1_like | 506 | 619 | 2.72235E-46 | IPR032350 |
| CDD | cd14319 | UBA_NBR1 | 893 | 930 | 3.68673E-14 | - |
| CDD | cd14319 | UBA_NBR1 | 852 | 889 | 1.85015E-12 | - |
| Pfam | PF00569 | Zinc finger, ZZ type | 437 | 472 | 4.5E-10 | IPR000433 |
| Pfam | PF00564 | PB1 domain | 107 | 188 | 1.4E-10 | IPR000270 |
| Pfam | PF16158 | Ig-like domain from next to BRCA1 gene | 517 | 618 | 1.7E-30 | IPR032350 |
| SUPERFAMILY | SSF46934 | UBA-like | 890 | 930 | 3.23E-7 | IPR009060 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 103 | 187 | 1.91E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 427 | 486 | 1.65E-13 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 503 | 622 | 5.9E-30 | IPR013783 |
| Gene3D | G3DSA:3.30.60.90 | - | 430 | 488 | 1.7E-11 | IPR043145 |
| Gene3D | G3DSA:1.10.8.10 | - | 845 | 890 | 6.5E-15 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 891 | 933 | 1.4E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 102 | 189 | 5.8E-18 | - |
| SMART | SM00291 | zz_5 | 436 | 473 | 4.2E-7 | IPR000433 |
| SMART | SM00666 | PB1_new | 105 | 190 | 8.4E-10 | IPR000270 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 436 | 483 | 11.791308 | IPR000433 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 850 | 891 | 9.317883 | IPR015940 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 105 | 190 | 15.41441 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 326 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24690.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein. | 0 |
| RefSeq | XP_008796589.2 | protein JOKA2-like [Phoenix dactylifera] | 0 |
| M1BJF6 | Protein JOKA2 OS=Solanum tuberosum OX=4113 GN=JOKA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CCZ8 | protein JOKA2-like OS=Phoenix dactylifera OX=42345 GN=LOC103712004 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13016, jg25928, jg27525 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13626 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000528 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g118120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30623, Sbi_jg58642 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28506 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014870 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55137, Sgl60389 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007680, gene:ENSEOMG00000023923 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023620, CQ.Regalona.r1.5BG0025110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30139930, pistato.v30141380 |
| Apiaceae | Apium graveolens | 6 | Ag10G00126, Ag2G00242, Ag4G00254, Ag4G00255, Ag5G00713 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G013810, scaffold005094G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697200, gene-LOC103712004 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.1668.V1.1, AsparagusV1_09.1669.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G08727, Ftri1G31289 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G24690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024557m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g22680.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g081320.2N, BniB03g012990.2N, BniB05g012530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1898 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2066 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g00880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0047s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g22720, gene.Thate09g09360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.666 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00022184, Pov_00022185, Pov_00033787 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23184, Lb4G23185 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4050, AH07.2435, BH07.2248, BH09.1477, CH07.2318 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0136020, gene-QOZ80_2BG0191560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0175440.1, HORVU.MOREX.r3.6HG0590780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023397, gene-QYE76_044603 |
| Poaceae | Oryza coarctata | 4 | Oco03G014210, Oco04G014540, Oco07G008550, Oco08G008460 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g38050.1, LOC_Os04g40090.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G180800, gene-BS78_06G134100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0204430, Pt_Chr0204491, Pt_Chr0302310, Pt_Chr0302358 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr06G008580, Chr09G012830, Chr12G013110, Chr13G008710 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G586100, Tel6E01G409400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG049050, gene_TRIDC2BG051620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G327000.1, TraesCS2B02G355000.6 ... |
| Poaceae | Zea mays | 5 | Zm00001eb079700_P001, Zm00001eb127620_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18655, nbis-gene-29772, nbis-gene-36883 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13801, Zma_g16598, Zma_g19915 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2423, evm.TU.LG14.1589 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1077, evm.TU.Scaffold_4_RagTag.432 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14753, nbisL1-mrna-28928 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6694, nbisL1-mrna-9528 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12633, nbisL1-mrna-1896 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.279, evm.TU.utg000010l.146 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001490, Maker00008965 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14627, nbisL1-mrna-715 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1425, nbisL1-mrna-8710 |
| Salicaceae | Populus euphratica | 3 | populus_peu28711, populus_peu30137, populus_peu30139 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132601682, gene-LOC132609562, gene-LOC132632592 |
| Solanaceae | Solanum chilense | 2 | SOLCI005419300, SOLCI006063400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014343, gene-LOC107023916 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11193, gene_15993 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2523, TC09G0955 |