Basic Information
Locus ID:
gene.Cymno08g00690
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 620391 | 625022 | - | gene.Cymno08g00690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 50,867.06 Da | 51.84 | 78.67 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 265 | 328 | 2.00641E-21 | - |
| CDD | cd16872 | ARID_HMGB9-like | 50 | 135 | 6.67325E-49 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 265 | 331 | 1.7E-13 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 52 | 135 | 6.7E-17 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 46 | 145 | 1.31E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 262 | 334 | 1.7E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 248 | 342 | 6.5E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 44 | 147 | 7.8E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 45 | 135 | 4.1E-28 | - |
| SMART | SM00398 | hmgende2 | 264 | 333 | 4.7E-16 | IPR009071 |
| SMART | SM00501 | bright_3 | 49 | 140 | 1.2E-28 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 265 | 332 | 14.356263 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 48 | 139 | 25.735796 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 394 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_008778105.1 | high mobility group B protein 15-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YKT2 | High mobility group B protein 15 OS=Anthurium amnicola OX=1678845 GN=HMGB15_15 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology