Basic Information
Locus ID:
gene.Cymno08g00150
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 195149 | 196240 | - | gene.Cymno08g00150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 40,075.04 Da | 54.16 | 79.06 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 304 | 0.047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 212 | 0.08 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 51 | 308 | 1.83E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 22 | 363 | 7.1E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 126 | 171 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 212 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 304 | 1.2E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 307 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 307 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 221 | 8.770704 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 291 | 305 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_020678014.1 | WD repeat-containing protein LWD1 [Dendrobium catenatum] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T3A6K3 | WD_REPEATS_REGION domain-containing protein OS=Dendrobium nobile OX=94219 GN=KFK09_025692 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology