Basic Information
Locus ID:
gene.Cymno07g13060
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 24202563 | 24221392 | + | gene.Cymno07g13060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 152,425.81 Da | 35.99 | 103.34 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 171 | 458 | 4.00407E-89 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 483 | 686 | 9.90378E-99 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1098 | 1318 | 4.20889E-102 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 785 | 1075 | 2.85884E-79 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 797 | 1027 | 1.3E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 171 | 437 | 1.9E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 508 | 638 | 3.1E-15 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1117 | 1265 | 3.9E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1092 | 1326 | 9.19E-68 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 507 | 699 | 1.07E-48 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 786 | 1082 | 7.32E-45 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 163 | 462 | 6.15E-30 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 151 | 468 | 1.2E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1083 | 1336 | 1.9E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 747 | 1081 | 2.5E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 506 | 738 | 3.8E-63 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1126 | 1309 | 2.1E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 512 | 686 | 3.6E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 787 | 1063 | 32.162182 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1100 | 1334 | 17.627184 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 476 | 709 | 21.415346 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 173 | 450 | 31.578453 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 611 | 625 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 757 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008777748.2 | putative ABC transporter C family member 15 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A443N0L2 | ABC transporter OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00027000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology