Basic Information
Locus ID:
gene.Cymno07g12670
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 23984738 | 23989950 | + | gene.Cymno07g12670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 57,513.38 Da | 49.83 | 72.96 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 30 | 115 | 5.93027E-49 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 241 | 304 | 9.65867E-21 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 32 | 115 | 1.4E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 241 | 307 | 1.6E-13 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 26 | 125 | 2.35E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 238 | 310 | 1.83E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 22 | 134 | 1.0E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 224 | 319 | 2.0E-19 | IPR036910 |
| SMART | SM00398 | hmgende2 | 240 | 309 | 4.6E-15 | IPR009071 |
| SMART | SM01014 | ARID_2 | 25 | 115 | 3.9E-28 | - |
| SMART | SM00501 | bright_3 | 29 | 120 | 1.8E-28 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 28 | 119 | 26.197321 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 241 | 308 | 14.417817 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 423 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_008778105.1 | high mobility group B protein 15-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YKT2 | High mobility group B protein 15 OS=Anthurium amnicola OX=1678845 GN=HMGB15_15 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology