Basic Information
Locus ID:
gene.Cymno07g11660
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Galactose oxidase, central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 23300577 | 23301746 | + | gene.Cymno07g11660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 42,652.10 Da | 53.19 | 66.19 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 52 | 5.6E-7 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 167 | 212 | 2.1E-10 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 124 | 165 | 3.1E-5 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 52 | 9.94E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 97 | 372 | 2.62E-42 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 86 | 380 | 1.7E-38 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 61 | 8.3E-7 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 3.8E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 179 | 226 | 3.3E-9 | IPR006652 |
| SMART | SM00612 | kelc_smart | 130 | 178 | 2.3E-4 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_009405095.1 | PREDICTED: F-box/kelch-repeat protein SKIP20-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NUD8 | Kelch repeat-containing F-box family protein OS=Zostera marina OX=29655 GN=ZOSMA_5G02670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology