Basic Information
Locus ID:
gene.Cymno07g11230
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 22928345 | 22931873 | - | gene.Cymno07g11230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 70,477.42 Da | 47.59 | 84.13 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 25 | 129 | 1.09103E-43 | - |
| Pfam | PF03000 | NPH3 family | 223 | 482 | 1.2E-95 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 29 | 120 | 2.1E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 24 | 135 | 5.41E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 140 | 2.5E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 223 | 506 | 95.095261 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 33 | 104 | 9.930406 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 603 | - | - |
| Coils | Coil | Coil | 553 | 580 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_010253705.1 | PREDICTED: BTB/POZ domain-containing protein At5g03250 isoform X1 [Nelumbo nucifera] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7ZYH1 | BTB/POZ domain-containing protein At5g03250 isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104594875 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology