Basic Information
Locus ID:
gene.Cymno07g09560
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 21303879 | 21305297 | + | gene.Cymno07g09560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 52,180.05 Da | 41.42 | 74.45 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 193 | 250 | 4.8E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 360 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 445 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 310 | 2.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 126 | 446 | 1.01E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 98 | 448 | 7.8E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 184 | 226 | 0.0042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 360 | 0.0072 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 267 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 445 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 194 | 235 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 278 | 310 | 11.286501 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 413 | 446 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 278 | 319 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 413 | 446 | 13.081652 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 432 | 446 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_009384738.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804LAG3 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103972211 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology