Basic Information
Locus ID:
gene.Cymno07g08990
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 20640070 | 20641802 | + | gene.Cymno07g08990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.99 | 58,435.60 Da | 43.41 | 67.56 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 208 | 493 | 1.08138E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 370 | 408 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 356 | 3.0E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 239 | 297 | 1.6E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 198 | 493 | 5.95E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 496 | 5.9E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 366 | 408 | 8.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 187 | 228 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 313 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 493 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 272 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 356 | 2.4E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 461 | 494 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 324 | 365 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 324 | 358 | 9.678328 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 461 | 494 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 240 | 272 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 240 | 281 | 11.410742 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 520 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_014520236.1 | cell division cycle 20.1, cofactor of APC complex [Vigna radiata var. radiata] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834WVQ6 | Cell division cycle 20.2, cofactor of APC complex-like OS=Senna tora OX=362788 GN=G2W53_015948 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology