Basic Information
Locus ID:
gene.Cymno07g08950
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 20611285 | 20616950 | - | gene.Cymno07g08950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 48,728.94 Da | 65.45 | 77.99 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 243 | 285 | 6.1907E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 19 | 171 | 1.22216E-44 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 242 | 285 | 6.0E-13 | IPR001841 |
| Pfam | PF02225 | PA domain | 73 | 151 | 5.5E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 89 | 169 | 9.94E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 298 | 3.03E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 31 | 159 | 2.7E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 290 | 2.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 243 | 284 | 1.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 285 | 12.592549 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_002269731.1 | PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Vitis vinifera] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YRT3 | E3 ubiquitin-protein ligase RNF167 OS=Anthurium amnicola OX=1678845 GN=Rnf167_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology