Basic Information
Locus ID:
gene.Cymno07g07850
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 19504689 | 19510222 | - | gene.Cymno07g07850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 61,842.86 Da | 57.57 | 76.28 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 376 | 533 | 2.7794E-98 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 373 | 479 | 1.6E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 15 | 102 | 1.1E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 375 | 506 | 2.09E-21 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 11 | 134 | 2.8E-32 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 355 | 544 | 5.8E-67 | - |
| SMART | SM00232 | pad1_6 | 375 | 503 | 8.6E-22 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 376 | 506 | 31.757132 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 296 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_008797799.2 | AMSH-like ubiquitin thioesterase 1 [Phoenix dactylifera] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1Z7D3 | AMSH-like ubiquitin thioesterase 1 OS=Anthurium amnicola OX=1678845 GN=AMSH1_3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology