Basic Information
Locus ID:
gene.Cymno07g07270
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 18857519 | 18860628 | + | gene.Cymno07g07270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 26,084.35 Da | 51.98 | 81.23 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 55 | 232 | 2.85966E-98 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 54 | 161 | 6.9E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 58 | 188 | 3.01E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 37 | 233 | 3.1E-70 | - |
| SMART | SM00232 | pad1_6 | 57 | 185 | 2.6E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 58 | 186 | 24.838579 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_020251277.1 | AMSH-like ubiquitin thioesterase 2 isoform X1 [Asparagus officinalis] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3S3NTF9 | AMSH-like protein ubiquitin thioesterase 2 isoform X1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02325700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology