Basic Information
Locus ID:
gene.Cymno07g07130
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 18748694 | 18756518 | + | gene.Cymno07g07130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 50,769.72 Da | 43.09 | 80.31 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 30 | 351 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 44 | 349 | 3.7E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 25 | 405 | 9.11E-125 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 23 | 412 | 7.7E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 11 | 452 | 3.2E-200 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 264 | 282 | 2.0E-28 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 169 | 192 | 6.0E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 247 | 260 | 2.0E-28 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 286 | 296 | 6.0E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 79 | 97 | 2.0E-28 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 201 | 216 | 6.0E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 46 | 63 | 2.0E-28 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 454 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_008791163.2 | histone deacetylase 6 isoform X3 [Phoenix dactylifera] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I0B7X2 | Histone deacetylase OS=Apostasia shenzhenica OX=1088818 GN=HDA6 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology