Basic Information
Locus ID:
gene.Cymno07g06610
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 18072975 | 18080602 | - | gene.Cymno07g06610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 70,892.96 Da | 46.28 | 86.41 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 122 | 3.39327E-44 | - |
| Pfam | PF00651 | BTB/POZ domain | 27 | 113 | 2.5E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 213 | 478 | 4.3E-96 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 114 | 7.46E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 9 | 116 | 1.9E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 127 | 9.1E-4 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 97 | 11.853831 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 502 | 94.57457 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 627 | - | - |
| Coils | Coil | Coil | 543 | 577 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_010923667.1 | BTB/POZ domain-containing protein At1g30440 [Elaeis guineensis] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D1XMG1 | BTB/POZ domain-containing protein At1g30440 OS=Anthurium amnicola OX=1678845 GN=At1g30440_3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology