Basic Information
Locus ID:
gene.Cymno07g06000
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 16840413 | 16854196 | + | gene.Cymno07g06000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 97,146.61 Da | 53.17 | 75.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 735 | 766 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 647 | 682 | 7.6E-5 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 96 | 321 | 3.89E-19 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 560 | 869 | 9.01E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 536 | 873 | 2.0E-115 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 98 | 328 | 6.3E-24 | - |
| SMART | SM00320 | WD40_4 | 551 | 589 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 639 | 26.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 36 | 318 | 5.2E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 728 | 766 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 685 | 724 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 775 | 814 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 682 | 2.0E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 649 | 691 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 735 | 775 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 735 | 768 | 10.390142 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 649 | 684 | 9.810144 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 318 | 9.715018 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 669 | 683 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 753 | 767 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 753 | 767 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 669 | 683 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 626 | 640 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010260211.1 | PREDICTED: protein SPA1-RELATED 3-like isoform X2 [Nelumbo nucifera] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YT62 | Protein SPA1-RELATED 3 OS=Anthurium amnicola OX=1678845 GN=SPA3_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology