Basic Information
Locus ID:
gene.Cymno07g05390
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 8091505 | 8097878 | + | gene.Cymno07g05390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 80,591.74 Da | 56.38 | 79.44 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 58 | 213 | 3.21587E-29 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 19 | 363 | 1.3E-109 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 366 | 423 | 3.9E-11 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 427 | 499 | 7.8E-6 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 92 | 158 | 1.1E-8 | IPR002934 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 15 | 211 | 1.96E-52 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 214 | 363 | 6.8E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 366 | 491 | 6.47E-37 | IPR011068 |
| Gene3D | G3DSA:1.10.1410.10 | - | 19 | 361 | 8.3E-156 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 51 | 207 | 8.3E-156 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 366 | 481 | 6.6E-27 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 594 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 558 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_019052368.1 | PREDICTED: LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Nelumbo nucifera] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8Q0M0 | polynucleotide adenylyltransferase OS=Nelumbo nucifera OX=4432 GN=LOC104592040 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology