Basic Information
Locus ID:
gene.Cymno07g04710
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 3875401 | 3876132 | - | gene.Cymno07g04710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 26,767.39 Da | 63.95 | 93.87 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 98 | 141 | 3.21296E-16 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 3.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 146 | 4.8E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 147 | 6.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 140 | 5.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 141 | 12.636808 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 199 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010916751.1 | RING-H2 finger protein ATL40-like [Elaeis guineensis] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9NKE7 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_95G00400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology