Basic Information
Locus ID:
gene.Cymno07g04590
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 3502219 | 3508679 | - | gene.Cymno07g04590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 131,448.81 Da | 41.74 | 80.51 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16266 | IF2_aeIF5B_IV | 992 | 1087 | 6.14111E-28 | - |
| CDD | cd01887 | IF2_eIF5B | 532 | 742 | 4.50671E-83 | - |
| CDD | cd03703 | aeIF5B_II | 755 | 862 | 5.26277E-52 | - |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 533 | 740 | 6.1E-36 | IPR000795 |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 768 | 845 | 5.7E-9 | IPR004161 |
| Pfam | PF11987 | Translation-initiation factor 2 | 867 | 970 | 3.8E-22 | IPR023115 |
| SUPERFAMILY | SSF50447 | Translation proteins | 989 | 1113 | 1.65E-28 | IPR009000 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 527 | 820 | 2.18E-64 | IPR027417 |
| SUPERFAMILY | SSF52156 | Initiation factor IF2/eIF5b, domain 3 | 854 | 984 | 2.75E-34 | IPR036925 |
| Gene3D | G3DSA:3.40.50.10050 | - | 871 | 977 | 8.7E-38 | IPR036925 |
| Gene3D | G3DSA:3.40.50.300 | - | 523 | 751 | 8.8E-72 | IPR027417 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 752 | 870 | 4.1E-51 | - |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 984 | 1120 | 2.4E-54 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 534 | 660 | 4.9E-16 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 529 | 745 | 47.169952 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 649 | 658 | 7.0E-8 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 533 | 546 | 7.0E-8 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 613 | 624 | 7.0E-8 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 597 | 607 | 7.0E-8 | IPR000795 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 194 | - | - |
| Coils | Coil | Coil | 186 | 211 | - | - |
| Coils | Coil | Coil | 377 | 404 | - | - |
| Coils | Coil | Coil | 231 | 298 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76810.1 | eukaryotic translation initiation factor 2 (eIF-2) family protein. | 0 |
| RefSeq | XP_010925041.1 | LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5B-like [Elaeis guineensis] | 0 |
| Q10251 | Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC56F8.03 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0ITU2 | Eukaryotic translation initiation factor 5B OS=Cocos nucifera OX=13894 GN=COCNU_14G000450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6070 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15301, gene_245 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah003421, Ah018262, Ah018421 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g050350, BVRB_7g173810, BVRB_9g202210 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... |
| Amaranthaceae | Salicornia europaea | 7 | Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004375, GOSA_00004376, GOSA_00017916 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01135, Sgl06220 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30037970 |
| Apiaceae | Apium graveolens | 6 | Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G000450, scaffold033353G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720357, gene-LOC103721040 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1583.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G06402, Ftri12G27292, Ftri9G10744 |
| Brassicaceae | Arabidopsis thaliana | 5 | AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g31970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1673 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g04590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0041s00031.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.718 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10385, Lb3G16650 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0094710.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015006, gene-QYE76_042706 |
| Poaceae | Oryza coarctata | 3 | Oco02G013470, Oco09G018380, Oco10G018310 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G078500, gene-BS78_08G078600 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505892, Pt_Chr0703558 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb345280_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13527, nbis-gene-48615 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25096, Zma_g27484 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g14760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1614 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19623, nbisL1-mrna-8731 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-402, nbisL1-mrna-8952 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.50, evm.TU.utg000023l.36 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003101 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19721, nbisL1-mrna-9392 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23779 |
| Salicaceae | Populus euphratica | 5 | populus_peu00417, populus_peu18706, populus_peu18723 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636476 |
| Solanaceae | Solanum chilense | 2 | SOLCI001496400, SOLCI003795700 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5392_chr02_+, gene_17626 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1943 |
| Zosteraceae | Zostera marina | 4 | Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... |