Basic Information
Locus ID:
gene.Cymno07g04250
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 3176501 | 3185421 | + | gene.Cymno07g04250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 169,258.25 Da | 35.21 | 108.44 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 958 | 1252 | 5.0866E-93 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 647 | 846 | 2.71812E-106 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 333 | 621 | 4.1307E-100 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1275 | 1495 | 1.99566E-124 | - |
| Pfam | PF00005 | ABC transporter | 666 | 799 | 2.3E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1294 | 1442 | 7.2E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 336 | 600 | 3.4E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 962 | 1204 | 1.5E-29 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 946 | 1259 | 6.8E-55 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 326 | 625 | 1.31E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 644 | 869 | 7.3E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1270 | 1508 | 5.13E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 309 | 629 | 7.3E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1260 | 1514 | 2.9E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 922 | 1258 | 5.1E-65 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 641 | 888 | 3.4E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1303 | 1494 | 5.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 674 | 847 | 3.5E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 647 | 870 | 22.295694 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1279 | 1511 | 18.254097 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 332 | 613 | 31.637396 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 961 | 1240 | 37.815044 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 772 | 786 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 910 | 930 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008792061.2 | ABC transporter C family member 3-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C573 | ABC transporter C family member 3-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103708769 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology