Basic Information
Locus ID:
gene.Cymno07g03950
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 2871003 | 2872523 | + | gene.Cymno07g03950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 47,258.26 Da | 44.36 | 75.24 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 360 | 399 | 7.7E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 161 | 279 | 7.98E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 97 | 148 | 2.18E-5 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 352 | 405 | 2.27E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 131 | 294 | 5.1E-19 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 341 | 404 | 1.9E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 357 | 399 | 11.032289 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_042981647.1 | F-box protein At1g67340-like [Carya illinoinensis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1QHH4 | MYND-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_05G109800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology