Basic Information
Locus ID:
gene.Cymno07g01730
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 995927 | 1003843 | - | gene.Cymno07g01730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 83,622.92 Da | 49.87 | 88.22 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 207 | 398 | 2.60613E-97 | - |
| CDD | cd18794 | SF2_C_RecQ | 399 | 531 | 4.20095E-68 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 417 | 521 | 2.9E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 534 | 612 | 1.3E-14 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 221 | 379 | 5.6E-16 | IPR011545 |
| Pfam | PF09382 | RQC domain | 620 | 730 | 1.5E-18 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 397 | 664 | 1.58E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 192 | 540 | 3.25E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 399 | 615 | 6.6E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 617 | 726 | 6.9E-18 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 180 | 398 | 2.5E-78 | IPR027417 |
| SMART | SM00490 | helicmild6 | 441 | 522 | 1.4E-25 | IPR001650 |
| SMART | SM00956 | RQC_2 | 622 | 733 | 1.7E-17 | IPR018982 |
| SMART | SM00487 | ultradead3 | 215 | 407 | 1.4E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 210 | 673 | 7.0E-155 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 227 | 391 | 21.122213 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 416 | 564 | 19.969788 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 330 | 339 | - | IPR002464 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_039120408.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A200QKI0 | DNA helicase OS=Macleaya cordata OX=56857 GN=BVC80_8753g5 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology