Basic Information
Locus ID:
gene.Cymno07g00140
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 105403 | 112020 | + | gene.Cymno07g00140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 49,387.05 Da | 31.37 | 83.25 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 24 | 313 | 5.6E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 6 | 370 | 1.68E-120 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 382 | 3.9E-138 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 430 | 9.5E-213 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 180 | 1.1E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 251 | 261 | 1.1E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 212 | 225 | 5.0E-54 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 133 | 156 | 1.1E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 26 | 43 | 5.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 59 | 77 | 5.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 90 | 107 | 5.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 152 | 168 | 5.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 111 | 131 | 5.0E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 229 | 247 | 5.0E-54 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 431 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_043713416.1 | histone deacetylase 9 isoform X1 [Telopea speciosissima] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | J3LXK7 | Histone deacetylase OS=Oryza brachyantha OX=4533 GN=102722667 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology