Basic Information
Locus ID:
gene.Cymno06g14030
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 24906079 | 24930182 | - | gene.Cymno06g14030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 138,820.61 Da | 44.20 | 79.52 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 124 | 247 | 1.57269E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 264 | 592 | 1.06468E-167 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 953 | 1164 | 3.5E-56 | IPR029346 |
| Pfam | PF00917 | MATH domain | 128 | 248 | 3.6E-22 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 266 | 587 | 2.3E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 691 | 943 | 1.2E-73 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 119 | 253 | 9.65E-42 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 261 | 617 | 5.1E-97 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 263 | 591 | 3.6E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 752 | 868 | 1.3E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 869 | 966 | 9.1E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 120 | 262 | 6.4E-53 | IPR008974 |
| SMART | SM00061 | math_3 | 123 | 227 | 5.1E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 266 | 590 | 40.017437 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 121 | 246 | 37.701492 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 506 | 523 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 267 | 282 | - | IPR018200 |
| Coils | Coil | Coil | 606 | 626 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010917891.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X8 [Elaeis guineensis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9QZD9 | ubiquitinyl hydrolase 1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042399 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology