Basic Information
Locus ID:
gene.Cymno06g12860
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 24060093 | 24064803 | + | gene.Cymno06g12860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 40,158.36 Da | 46.73 | 62.08 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 143 | 362 | 8.0E-86 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 253 | 352 | 1.37E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 249 | 364 | 9.0E-45 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 254 | 353 | 25.546684 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 105 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_009420668.1 | PREDICTED: auxin-responsive protein IAA30-like [Musa acuminata subsp. malaccensis] | 0 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q082 | Auxin-responsive protein OS=Zostera marina OX=29655 GN=ZOSMA_13G00690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology