Basic Information
Locus ID:
gene.Cymno06g12390
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 23750662 | 23752518 | + | gene.Cymno06g12390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 70,160.21 Da | 53.06 | 66.62 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 344 | 391 | 1.5E-7 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 521 | 608 | 6.5E-30 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 315 | 490 | 2.3E-29 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 347 | 379 | 2.5E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 344 | 378 | 11.8273 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 246 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_009395987.1 | PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PRR8 | Pentatricopeptide repeat-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_18G00320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology